[{"src_path": "hub/funding-opportunities/item-scientify-genomics-bioinformatics.md", "base_url": "https://globalmicrobialidentifier.org", "context_path": "hub/funding-opportunities", "title": "Genomics and bioinformatics funding calls: live Scientify Research search", "date": "2026-09-01", "description": "A narrower Scientify Research search pairing genomics with bioinformatics, aimed at calls that fund computational and data science work rather than laboratory research alone. The link runs the search live, and each call carries its own deadline, amount and eligibility rules, shown on the destination page.", "terms": ["Costing/Funding", "Research", "Bioinformatics Protocols", "Pathogen-agnostic"], "thumbnail": null, "category": "Funding opportunities", "additional_metadata": {"link": "https://www.scientifyresearch.org/?s=genomics+bioinformatics", "link_valid": true, "link_checked_at": "2026-09-01T13:49:01.027108"}, "page_number": 1, "directory": "hub", "items_per_page": 4}, {"src_path": "hub/funding-opportunities/item-scientify-genomics.md", "base_url": "https://globalmicrobialidentifier.org", "context_path": "hub/funding-opportunities", "title": "Genomics funding calls: live Scientify Research search", "date": "2026-09-01", "description": "A standing search of the Scientify Research index for genomics funding, returning grants, fellowships and scholarships from agencies such as NIH, EMBL-EBI and national research councils. The link runs the search live, and each call carries its own deadline, amount and eligibility rules, shown on the destination page.", "terms": ["Costing/Funding", "Research", "Pathogen-agnostic"], "thumbnail": null, "category": "Funding opportunities", "additional_metadata": {"link": "https://www.scientifyresearch.org/?s=genomics", "link_valid": true, "link_checked_at": "2026-09-01T13:49:01.027108"}, "page_number": 1, "directory": "hub", "items_per_page": 4}]
[{"src_path": "hub/funding-opportunities/item-scientify-genomics-bioinformatics.md", "title": "Genomics and bioinformatics funding calls: live Scientify Research search", "category": "Funding opportunities", "terms": ["Costing/Funding", "Research", "Bioinformatics Protocols", "Pathogen-agnostic"]}, {"src_path": "hub/funding-opportunities/item-scientify-genomics.md", "title": "Genomics funding calls: live Scientify Research search", "category": "Funding opportunities", "terms": ["Costing/Funding", "Research", "Pathogen-agnostic"]}, {"src_path": "hub/scientific-papers/item-pubmed-microbial-genomics.md", "title": "Microbial bioinformatics and genomics: live PubMed search", "category": "Scientific papers", "terms": ["Research", "Pathogen-agnostic", "Knowledge Mobilization"]}, {"src_path": "hub/scientific-papers/item-pubmed-one-health-genomics.md", "title": "One Health bioinformatics and genomics: live PubMed search", "category": "Scientific papers", "terms": ["Research", "One Health Surveillance", "Pathogen-agnostic", "Knowledge Mobilization"]}, {"src_path": "hub/tools/item-cgdist.md", "title": "cgDist: SNP and InDel distance calculator for cgMLST", "category": "Tools", "terms": ["Software (Tool/Workflow)", "Microbial Typing", "Variant Detection", "Outbreak Detection/Investigation", "Pathogen-agnostic"]}, {"src_path": "hub/tools/item-cgmlst-dists-py.md", "title": "cgmlst-dists-py: GPU-accelerated pairwise distance calculator for cgMLST", "category": "Tools", "terms": ["Software (Tool/Workflow)", "Microbial Typing", "Outbreak Detection/Investigation", "Pathogen-agnostic"]}, {"src_path": "hub/tools/item-chewbbaca.md", "title": "chewBBACA: cg/wgMLST schema creation and allele calling suite", "category": "Tools", "terms": ["Software (Tool/Workflow)", "Microbial Typing", "Data Standardization/Harmonization", "Outbreak Detection/Investigation", "Pathogen-agnostic"]}, {"src_path": "hub/tools/item-chewcall.md", "title": "chewcall: high-performance cgMLST and wgMLST allele caller", "category": "Tools", "terms": ["Software (Tool/Workflow)", "Microbial Typing", "Outbreak Detection/Investigation", "Pathogen-agnostic"]}, {"src_path": "hub/tools/item-cohesive.md", "title": "COHESIVE Information System (CIS)", "category": "Tools", "terms": ["Software (Platform)", "Systems Development", "One Health Surveillance", "Outbreak Detection/Investigation", "Pathogen-agnostic"]}, {"src_path": "hub/tools/item-dist2mst.md", "title": "dist2mst: Minimum Spanning Tree construction from distance matrices", "category": "Tools", "terms": ["Software (Tool/Workflow)", "Phylogenetic Tree Construction", "Outbreak Detection/Investigation", "Pathogen-agnostic"]}, {"src_path": "hub/tools/item-efsa-wgs-onehealth.md", "title": "EFSA One Health WGS analytical pipeline", "category": "Tools", "terms": ["Software (Tool/Workflow)", "Microbial Typing", "Data Standardization/Harmonization", "One Health Surveillance", "Outbreak Detection/Investigation", "Pathogen-specific"]}, {"src_path": "hub/tools/item-efsa-wgs-reporting-guidelines.md", "title": "Guidelines for reporting WGS-based typing data via the EFSA WGS System", "category": "Tools", "terms": ["Documentation", "Policy", "Data Standardization/Harmonization", "Microbial Typing", "One Health Surveillance", "Pathogen-specific"]}, {"src_path": "hub/tools/item-galaxytrakr.md", "title": "GalaxyTrakr: bioinformatics platform for public health WGS analysis", "category": "Tools", "terms": ["Software (Platform)", "Microbial Typing", "One Health Surveillance", "Outbreak Detection/Investigation", "Pathogen-agnostic"]}, {"src_path": "hub/tools/item-reportree.md", "title": "ReporTree: genetic clustering and surveillance-oriented reporting", "category": "Tools", "terms": ["Software (Tool/Workflow)", "Microbial Typing", "Phylogenetic Tree Construction", "Outbreak Detection/Investigation", "Public Health Decision Making", "Pathogen-agnostic"]}, {"src_path": "hub/tools/item-shovill.md", "title": "Shovill: fast de novo assembly of bacterial isolate genomes", "category": "Tools", "terms": ["Software (Tool/Workflow)", "Assembly/consensus Sequence Generation", "Read Processing", "Sequence Quality Control", "Pathogen-agnostic"]}, {"src_path": "hub/tools/item-spread.md", "title": "SPREAD: Spatiotemporal Pathogen Relationships and Epidemiological Analysis Dashboard", "category": "Tools", "terms": ["Software (Tool/Workflow)", "Phylodynamics", "Outbreak Detection/Investigation", "One Health Surveillance", "Pathogen-agnostic"]}, {"src_path": "hub/training-resources/item-coursera-bioinformatics-genomics.md", "title": "Bioinformatics and genomics: live Coursera search", "category": "Training resources", "terms": ["Training Resource", "Knowledge Mobilization", "Pathogen-agnostic"]}, {"src_path": "hub/training-resources/item-coursera-bioinformatics-ngs.md", "title": "Bioinformatics and next-generation sequencing (NGS): live Coursera search", "category": "Training resources", "terms": ["Training Resource", "Knowledge Mobilization", "Pathogen-agnostic"]}]
GMI16 registration is open. Join scientists, public health professionals, veterinarians, food safety experts, environmental specialists, policy makers and industry partners in Tunis, Tunisia, for the 16th Global Microbial Identifier Conference on 24–25 September 2026.
Global Microbial Identifier is an open community of passionate One Health professionals advancing microbial genomic surveillance and promoting microbial data sharing to create common benefits for all.
