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GMI16 registration is open. Join scientists, public health professionals, veterinarians, food safety experts, environmental specialists, policy makers and industry partners in Tunis, Tunisia, for the 16th Global Microbial Identifier Conference on 24–25 September 2026.
Global Microbial Identifier is an open community of passionate One Health professionals advancing microbial genomic surveillance and promoting microbial data sharing to create common benefits for all.